BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB007A02SP1|AL425615
(780 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1209 1522 0.0
>3x_Contig1209
Length = 5033
Score = 1522 bits (767), Expect = 0.0
Identities = 778/781 (99%), Gaps = 1/781 (0%)
Strand = Plus / Minus
Query: 1 gatcatgattgcttcactaaatatctctgcactaacataattcacatcgattgcttgacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1673 gatcatgattgcttcactaaatatctctgcactaacataattcacatcgattgcttgacc 1614
Query: 61 tgtcttctctattcccatcgatagacgattcatttgttcaaataatgcactcacttgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1613 tgtcttctctattcccatcgatagacgattcatttgttcaaataatgcactcacttgaaa 1554
Query: 121 cacgctattctctagactgaacgcgttgaaatacgcgccgagttcagataaaacagccga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1553 cacgctattctctagactgaacgcgttgaaatacgcgccgagttcagataaaacagccga 1494
Query: 181 ataagtttgaatattcgaccttatacttctaacggtcttgttcaaaggttgtaggatcgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1493 ataagtttgaatattcgaccttatacttctaacggtcttgttcaaaggttgtaggatcgc 1434
Query: 241 cttgtacctgatgagatctgaatcgtaatccgcgaacttgatctccatcacatcgttccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1433 cttgtacctgatgagatctgaatcgtaatccgcgaacttgatctccatcacatcgttccg 1374
Query: 301 gcctatcaattgttcatgcttacgcattgtcagcaccgtagtt-ttggcaataataaatg 359
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 1373 gcctatcaattgttcatgcttacgcattgtcagcaccgtaggtgttggcaataataaatg 1314
Query: 360 tatggggcttggtttcgtgggatttaatggaggcgctaaaagattattcattggtaggat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1313 tatggggcttggtttcgtgggatttaatggaggcgctaaaagattattcattggtaggat 1254
Query: 420 tgagatcggtggggtatttaaaacttccttccagaaatattctggattcaagaatttttg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1253 tgagatcggtggggtatttaaaacttccttccagaaatattctggattcaagaatttttg 1194
Query: 480 aaacacgatatgattccttatctctctcactttatggcagttatttaaaaaccttgataa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 aaacacgatatgattccttatctctctcactttatggcagttatttaaaaaccttgataa 1134
Query: 540 tagcctctgtcttctttctataattttgatatccttctttgcatgcmaaggattgaacaa 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1133 tagcctctgtcttctttctataattttgatatccttctttgcatgcaaaggattgaacaa 1074
Query: 600 atactttataatggggtgctttgaaggaatgggtggtataataattgtaggtaacaacct 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 atactttataatggggtgctttgaaggaatgggtggtataataattgtaggtaacaacct 1014
Query: 660 gcataaagattgccttaatgagtcgaattcagaatatctcctagttaccacaatgcctcc 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 gcataaagattgccttaatgagtcgaattcagaatatctcctagttaccacaatgcctcc 954
Query: 720 aaattcgatcttataaccgattgcatatttgccataaatgtctctatattggcctgcatc 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 aaattcgatcttataaccgattgcatatttgccataaatgtctctatattggcctgcatc 894
Query: 780 a 780
|
Sbjct: 893 a 893
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5388
Number of Sequences: 1807
Number of extensions: 5388
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 780
length of database: 10,358,551
effective HSP length: 16
effective length of query: 764
effective length of database: 10,329,639
effective search space: 7891844196
effective search space used: 7891844196
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)